UK Biobank

PRISM: ancestry-aware integration of tissue-specific genomic annotations enhances the transferability of polygenic scores featured image

PRISM: ancestry-aware integration of tissue-specific genomic annotations enhances the transferability of polygenic scores

In this study, led by Xiaohe (Lucy) Tian, we showed that ancestry-aware integration of tissue-specific genomic annotations enhances the transferability of polygenic scores (PGS).

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Lucy Tian
Hypometric genetics: Improved power in genetic discovery by incorporating quality control flags featured image

Hypometric genetics: Improved power in genetic discovery by incorporating quality control flags

We introduce "hypometric genetics," an approach to investigate the genetic basis of binarized traits representing the presence of below-the-limit-of-quantification (BLQ) quality …

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Yosuke Tanigawa, Ph.D.
A polygenic score method boosted by non-additive models featured image

A polygenic score method boosted by non-additive models

We developed GenoBoost, a polygenic score modeling approach, incorporating both additive and non-additive genetic dominance effects.

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Yosuke Tanigawa, Ph.D.
Power of inclusion: Enhancing polygenic prediction with admixed individuals featured image

Power of inclusion: Enhancing polygenic prediction with admixed individuals

We developed a polygenic score training approach that allows direct inclusion of admixed individuals without the need for local ancestry inference and showed ancestry-diverse …

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Yosuke Tanigawa, Ph.D.
Large-scale multivariate sparse regression with applications to UK Biobank featured image

Large-scale multivariate sparse regression with applications to UK Biobank

In this study led by Junyang Qian, we present a method to fit sparse multi-variate and multi-response regression model.

Significant Sparse Polygenic Risk Scores across 813 traits in UK Biobank featured image

Significant Sparse Polygenic Risk Scores across 813 traits in UK Biobank

We performed a systematic assessment of the predictive performance of PRS models across >1,500 traits in UK Biobank and report 813 PRS models with significant predictive …

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Yosuke Tanigawa, Ph.D.
Bayesian model comparison for rare-variant association studies of multiple phenotypes featured image

Bayesian model comparison for rare-variant association studies of multiple phenotypes

When applied to cardiometabolic biomarker traits in UK Biobank, MRP identified gene-biomarker associations that were not identified in single-variant GWAS analysis.

A cross-population atlas of genetic associations for 220 human phenotypes featured image

A cross-population atlas of genetic associations for 220 human phenotypes

Using a set of GWAS summary statistics of diseases characterized from both European (UK Biobank and FinnGen) and East Asian (Biobank Japan) populations, we dissected latent DeGAs …

Genetics of 35 blood and urine biomarkers in the UK Biobank featured image

Genetics of 35 blood and urine biomarkers in the UK Biobank

We analyzed the genetic basis of 35 blood and urine biomarkers in UK Biobank. We revealed that genetic effects on biomarkers inform the genetic basis of disease.

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Yosuke Tanigawa, Ph.D.